1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...accgtgcctctgcttgactcggaggacaccgacgaactgacggaagcaggcgcgtcgaaggaacataacaattctcagtgctcgcctcgcctgcccgcagGCCGCAGTGGTTTGCACCGCGAGAGCCCTAACCGTTGGCATTGCAGGAAGGAGGCGGAGGTTGCGTTCCTACCGCGCCGCGTTGGAGCGGCACTTCGGCA
species | Zea mays |
transcript | GRMZM2G349834_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
gcaggcgcgtcgaaggaacataacaattctcagtgctcgcctcgcctgcccgcagGCCGCAGTGGTTTGCACCGCGAGAGCCCTAACCGTTGGCATTGCAGGAAGGAGGCGGAGGTTGCGTTCCTACCGCGCCGCGTTGGAGCGGCACTTCGGCA
acataac putative branch site (score: 3)
cctcgcct putative PPT
ataacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgtgcctctgcttgactcggaggacaccgacgaactgacggaagcaggcgcgtcgaaggaacataacaattctcagtgctcgcctcgcctgcccgcagGCCGCAGTGGTTTGCACCGCGAGAGCCCTAACCGTTGGCATTGCAGGAAGGAGGCGGAGGTTGCGTTCCTACCGCGCCGCGTTGGAGCGGCACTTCGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
-ccgtgcc
- - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - gaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa