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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctactttagagcgagcattgtgctactactattttagagcgctgctttgaatatgcggagcatggttcctaacggatgtcgttctgccttgcaatttcagCGGAGGCAGTACTACATGAATCTATTGCTTTTGGCTTACCAGAGCTTTGGTGTTGTTTACGGTGACCTAAGCACATCGCCTCTTTACGTTTATAAAAGCA

Basic information

species Zea mays
transcript GRMZM2G345226_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308735|gb|FL135344.1|FL135344
EST:     TCGAGTTAATGGACGCCGAGGCTGGCGTCGCCGGCGCCGACCAGCTGCCG                         CGGAGGCAGTACTACATGAATCTATTGCTTTTGGCTTACCAGAAGCTTTGG
genomic: TCGAGTTAATGGACGCCGAGGCTGGCGTCGCCGGCGCCGACCAGCTGCCGgtagggaggc ... gcaatttcagCGGAGGCAGTACTACATGAATCTATTGCTTTTGGCTTACCAGA-GCTTTGG
EST: gi|211105985|gb|FL446087.1|FL446087
EST:     TTAATGGACGCCGAGGCTGGCGTCGCCGGCGCCGACCAGCTGCCG                         CGGAGGCAGTACTACATGAATCTATTGCTTTTGGCTTACCAGAGCTTTGGT
genomic: TTAATGGACGCCGAGGCTGGCGTCGCCGGCGCCGACCAGCTGCCGgtagggaggc ... gcaatttcagCGGAGGCAGTACTACATGAATCTATTGCTTTTGGCTTACCAGAGCTTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatatgcggagcatggttcctaacggatgtcgttctgccttgcaatttcagCGGAGGCAGTACTACATGAATCTATTGCTTTTGGCTTACCAGAGCTTTGGTGTTGTTTACGGTGACCTAAGCACATCGCCTCTTTACGTTTATAAAAGCA
                     tcctaac  putative branch site (score: 1)
                                               aatttca  TA-rich tract