Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAGTCGACCGCCGCAGACCGGGAGTAGTCGACGCGCCGTCACTGAATCCTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgacgcatgcgcgagcgcttctcttcttctcttttcgctgtgcttttagtctgttcgtttgatgcccagatctactaggtttgtgtgatgagcc...

Basic information

species Zea mays
transcript GRMZM2G343543_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211063508|gb|FL179764.1|FL179764
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063509|gb|FL179765.1|FL179765
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|29577187|gb|CB617299.1|CB617299
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGC-NG                         -AG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33101736|gb|CF061696.1|CF061696
EST:     CACGGCTAGCCGTAATCACGCCACTCTGCTGAGTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CACGGCTAGCCGTAATCACGCCACTCTGCTGA---CT--C-CC-GGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|14202731|gb|BG836408.1|BG836408
EST:     CAGATCACGGCTAGCCGTAATCACACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCATATCAACA
genomic: CAGATCACGGCTAGCCGTAAT--CACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063514|gb|FL179770.1|FL179770
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238770|gb|FL179788.1|FL179788
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGSTGWC-DNCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238778|gb|FL179796.1|FL179796
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32863883|gb|CF003565.1|CF003565
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|29167742|gb|CB411002.1|CB411002
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236534|gb|FL179774.1|FL179774
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236532|gb|FL179772.1|FL179772
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211241010|gb|FL179802.1|FL179802
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32912731|gb|CF017543.1|CF017543
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238769|gb|FL179787.1|FL179787
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236538|gb|FL179778.1|FL179778
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|30307009|gb|CD001682.1|CD001682
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32943193|gb|CF048012.1|CF048012
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063504|gb|FL179760.1|FL179760
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32867191|gb|CF006873.1|CF006873
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063515|gb|FL179771.1|FL179771
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|26557363|gb|CA829598.1|CA829598
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236541|gb|FL179781.1|FL179781
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063506|gb|FL179762.1|FL179762
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACWTTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32907361|gb|CF012174.1|CF012174
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236540|gb|FL179780.1|FL179780
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|60347413|gb|DN214386.1|DN214386
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063512|gb|FL179768.1|FL179768
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAMCATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|67020199|gb|CO448948.1|CO448948
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32906906|gb|CF011719.1|CF011719
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32908691|gb|CF013504.1|CF013504
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063510|gb|FL179766.1|FL179766
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063507|gb|FL179763.1|FL179763
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|9028768|gb|BE238808.1|BE238808
EST:     TCAGATCACGGCTAGCGCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: TCAGATCACGGCTAGC-CGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063505|gb|FL179761.1|FL179761
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211060521|gb|FL179755.1|FL179755
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32916620|gb|CF021432.1|CF021432
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33095217|gb|CF055211.1|CF055211
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32943328|gb|CF048147.1|CF048147
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211241012|gb|FL179804.1|FL179804
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32830602|gb|CD970280.1|CD970280
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32848711|gb|CD988392.1|CD988392
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|60401470|gb|DN234277.1|DN234277
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211060522|gb|FL179756.1|FL179756
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32943524|gb|CF048343.1|CF048343
EST:     CTCAGATCAGGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|31558815|gb|CD528027.1|CD528027
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGNGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238780|gb|FL179798.1|FL179798
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|20301118|gb|BQ164061.1|BQ164061
EST:     CTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|67020503|gb|CO449252.1|CO449252
EST:     CTCAGA-CACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGC--G                         -AGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33094195|gb|CF054189.1|CF054189
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33094137|gb|CF054131.1|CF054131
EST:     CTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238775|gb|FL179793.1|FL179793
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|6536606|gb|AW224919.1|AW224919
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236536|gb|FL179776.1|FL179776
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32931600|gb|CF036412.1|CF036412
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236537|gb|FL179777.1|FL179777
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|6021320|gb|AW066248.1|AW066248
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238772|gb|FL179790.1|FL179790
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|29130587|gb|CB381291.1|CB381291
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32907113|gb|CF011926.1|CF011926
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236542|gb|FL179782.1|FL179782
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211241011|gb|FL179803.1|FL179803
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238782|gb|FL179800.1|FL179800
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32907980|gb|CF012793.1|CF012793
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238771|gb|FL179789.1|FL179789
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|31250100|gb|CD219124.1|CD219124
EST:     CAGATCACGGCTAGCCGTAATCACACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCATATCAACA
genomic: CAGATCACGGCTAGCCGTAAT--CACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|29576937|gb|CB617049.1|CB617049
EST:     ACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: ACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236543|gb|FL179783.1|FL179783
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236544|gb|FL179784.1|FL179784
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33093746|gb|CF053740.1|CF053740
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCGGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|6012301|gb|AW061657.1|AW061657
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGC--G                         -AGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238774|gb|FL179792.1|FL179792
EST:     CTCAGATCACGGCTAGCCGTAAYCACGACACTCTGCKGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|9952771|gb|BE639354.1|BE639354
EST:     GCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: GCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32908860|gb|CF013673.1|CF013673
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063511|gb|FL179767.1|FL179767
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32945383|gb|CF050202.1|CF050202
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236545|gb|FL179785.1|FL179785
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063503|gb|FL179759.1|FL179759
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTSCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|31405637|gb|CD484369.1|CD484369
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCAGTCGACCGCCGCAGACCGGGAGTAGTCGACGCGCCGTCACTGAATCCTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgacgcatgcgcgagcgcttctcttcttctcttttcgctgtgcttttagtctgttcgtttgatgcccagatctactaggtttgtgtgatgagcc

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