Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggggtacttcgactttgttttttccggattgtttgattactggtctattcccatacatatttgtttctcattgattttatataattttgatgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACATTGTGGTCATTGGACATGTCGACTCTGGCAAGTCGACCACCACTGGCCA

Basic information

species Zea mays
transcript GRMZM2G343543_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G343543_T05 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G07350.1 (Glycine max), 3'ss of exon 1
gggggtacttcgactttgttttttccggattgtttgattactggtctattcc-catacatatttgtttctcattgattttatataattttgatgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACATTGTGGTCATTGGACATGTCGACTCTGGCAAGTCGACCACCACTGGCCA------------
         |    |   ||| |   | ||| |||||  | |    || |     ||  |  || |||    |||  | |   | ||     | | |    | || | ||| |||     |  |||||| || ||||||  |||||| ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||            
---------tgatgtacatttgtaatgaattatttgaaaattaacttactgggtgtaattccttattttgtgttg--tctgactcatgaacctatgaatt-ctgtttcacagTTTAAGATA-TCATGGGTAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCATGTTGACTCTGGGAAGTCAACCACCACTGGCCACTTGATTTACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211063508|gb|FL179764.1|FL179764
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063507|gb|FL179763.1|FL179763
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063509|gb|FL179765.1|FL179765
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|9794538|gb|BE552846.1|BE552846
EST:     ACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: ACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33101736|gb|CF061696.1|CF061696
EST:     CACGGCTAGCCGTAATCACGCCACTCTGCTGAGTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CACGGCTAGCCGTAATCACGCCACTCTGCTGA---CT--C-CC-GGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211060521|gb|FL179755.1|FL179755
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32907361|gb|CF012174.1|CF012174
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238770|gb|FL179788.1|FL179788
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGSTGWC-DNCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32907980|gb|CF012793.1|CF012793
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236532|gb|FL179772.1|FL179772
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211241010|gb|FL179802.1|FL179802
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32912731|gb|CF017543.1|CF017543
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|30307009|gb|CD001682.1|CD001682
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAG-GTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32943193|gb|CF048012.1|CF048012
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063515|gb|FL179771.1|FL179771
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236541|gb|FL179781.1|FL179781
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063506|gb|FL179762.1|FL179762
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACWTTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063512|gb|FL179768.1|FL179768
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAMCATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063510|gb|FL179766.1|FL179766
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|9028768|gb|BE238808.1|BE238808
EST:     TCAGATCACGGCTAGCGCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: TCAGATCACGGCTAGC-CGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063505|gb|FL179761.1|FL179761
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33095217|gb|CF055211.1|CF055211
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32943328|gb|CF048147.1|CF048147
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063514|gb|FL179770.1|FL179770
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211241012|gb|FL179804.1|FL179804
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32830602|gb|CD970280.1|CD970280
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32848711|gb|CD988392.1|CD988392
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211060522|gb|FL179756.1|FL179756
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32943524|gb|CF048343.1|CF048343
EST:     CTCAGATCAGGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|31558815|gb|CD528027.1|CD528027
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGNGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238780|gb|FL179798.1|FL179798
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33094195|gb|CF054189.1|CF054189
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33094137|gb|CF054131.1|CF054131
EST:     CTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238775|gb|FL179793.1|FL179793
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236536|gb|FL179776.1|FL179776
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32931600|gb|CF036412.1|CF036412
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211236537|gb|FL179777.1|FL179777
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238772|gb|FL179790.1|FL179790
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|6536606|gb|AW224919.1|AW224919
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211241011|gb|FL179803.1|FL179803
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238782|gb|FL179800.1|FL179800
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238771|gb|FL179789.1|FL179789
EST:     CTCAGATCACGGCTAGCCGTAATCACGACACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|31250100|gb|CD219124.1|CD219124
EST:     CAGATCACGGCTAGCCGTAATCACACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCATATCAACA
genomic: CAGATCACGGCTAGCCGTAAT--CACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238769|gb|FL179787.1|FL179787
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|33093746|gb|CF053740.1|CF053740
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCGGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211238774|gb|FL179792.1|FL179792
EST:     CTCAGATCACGGCTAGCCGTAAYCACGACACTCTGCKGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|9952771|gb|BE639354.1|BE639354
EST:     GCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: GCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|32945383|gb|CF050202.1|CF050202
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
EST: gi|211063503|gb|FL179759.1|FL179759
EST:     CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTSCCGGCGAG                         CAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA
genomic: CTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 234

CGCAGTCGACCGCCGCAGACCGGGAGTAGTCGACGCGCCGTCACTGAATCCTCAGATCACGGCTAGCCGTAATCACGCCACTCTGCTGACTCCCGGCGAGgtactctgac ... atgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACATTGTGGTCATTGGACATGTCGACTCTGGCAAGTCGACCACCACTGGCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattcccatacatatttgtttctcattgattttatataattttgatgtaagcagCAGTGTAACATTTTCCTTCAGCCATGGGCAAGGAGAAGACTCACATCAACATTGTGGTCATTGGACATGTCGACTCTGGCAAGTCGACCACCACTGGCCA
                                        ttttgat  putative branch site (score: 234)
        atacatatttgtttct  TA-rich tract