1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtctattaactacattaacatagcaaagtttgtactgttcaactttgagtgactagttacttttgagtggctaatgcacacccatttttataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAATTTAATGAAACCAGTAAATGTAGATGGCAACATTGGTGGTGATAATGCA
species | Zea mays |
transcript | GRMZM2G337311_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAA GAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAAEST: gi|211066929|gb|FK979252.1|FK979252
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAGgtagtaatct ... ataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAA
EST: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAG GAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAAEST: gi|211066928|gb|FK979251.1|FK979251
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAGgtagtaatct ... ataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAA
EST: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAG GAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAAEST: gi|211066927|gb|FK979250.1|FK979250
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAGgtagtaatct ... ataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAA
EST: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAG GAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAA
genomic: TTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTACCGAAAGgtagtaatct ... ataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAA
ttgagtgactagttacttttgagtggctaatgcacacccatttttataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAATTTAATGAAACCAGTAAATGTAGATGGCAACATTGGTGGTGATAATGCA
ggctaat putative branch site (score: 66)
tttttat putative PPT
atttttataaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctattaactacattaacatagcaaagtttgtactgttcaactttgagtgactagttacttttgagtggctaatgcacacccatttttataaacatagGAATGATCCAGGTGGAAGCTCCAGGAACAATCCCATTCAGTTTGATGTAAATTTAATGAAACCAGTAAATGTAGATGGCAACATTGGTGGTGATAATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - aactaca
- - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcac