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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTGCCGGTGCCTCGAGAGCTCCCTCCGCTTCTACCGCGACGTCCTCGGCTTCGCCCCCATCCGCCGCCCGGGCTCCTTCGACTTCGACGGCGCATGgtacggcattcgactgcacacagctatatcactgacgatgcctttattgtcaagctagctaacaatcatgtaatcatactgcatgacctgcatgttcaacaactcattctactgcgcag

Basic information

species Zea mays
transcript GRMZM2G336437_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G336437_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g07850.1 (Oryza sativa), 5'ss of exon 1
TGGTGTGCCGGTGCCTCGAGAGCTCCCTCCGCTTCTACCGCGACGTCCTCGGCTTCGCCCCCATCCGCCGCCCGGGCTCCTTCGACTTCGACGGCGCATGgtacggcattcgactgcacacagctatatcactgacgatgcctttattgtcaagctagctaacaatcatgtaatcatactgcatgacctgcatgttcaacaactcattctactgcgcag
||||||||||||  ||    | ||| |||  ||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||     | |  | |      | ||||  ||     |     ||| | | ||  || |||| | | ||  |   |||    |  |  | |||    |                     
TGGTGTGCCGGTCGCTGTCCACCTCGCTCACCTTCTACCGCGACTTCCTCGGCTTCGTCTCCGTCCGCCGCCCGGGCTCCTTCGACTTCGACGGCGCATGgtatatactccatccgtttcaggttataatacgtttaactaaattactttaaatttaactaa-atttatagataaatataataatatttacatcactagat------------------