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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgtctccattcccgtcctcgtttacgtttctcgggtcaggtcctgcgctgggcaggcgttcctcgtttaagttttgtcgattcggttgctgtgcagGTGTGCTTGGAGCCGCGTTCGGGCTGCTGTCGCGGCACCGGGCGCGCCTTGGCGCCGCCCGCGCCGCTGTCACCTACGCCGCGAACCTCGCCATCGTTGC

Basic information

species Zea mays
transcript GRMZM2G334680_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G334680_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g30740.1 (Oryza sativa), 3'ss of exon 1
gtgagtcgtctccattcccgtcctcgtttac--gtttctcgggtcaggtcctgcgctgggcaggcgttcctcgtttaagttttgtcgattcggttgctgtgcagGTGTGCTTGGAGCCGCGTTCGGGCTGCTGTCGCGGCACCGGGCGCGCCTTGGCGCCGCCCGCGCCGCTGTCACCTACGCCGCGAACCTCGCCATCGTTGC
||||| || | |||  ||   || ||   |     |   || |   | | |      |||  || | | | |   | | |||||       || |||| || ||||||| | ||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||| |||||||||||||| ||
gtgagccgcccccaacccaccccccgaagaaaaactcgccgcgggcgattccaaagggggagggggattcgc---tgacttttg-------ggatgctctgtagGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGGCTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcgctgggcaggcgttcctcgtttaagttttgtcgattcggttgctgtgcagGTGTGCTTGGAGCCGCGTTCGGGCTGCTGTCGCGGCACCGGGCGCGCCTTGGCGCCGCCCGCGCCGCTGTCACCTACGCCGCGAACCTCGCCATCGTTGC
                        tttaagtttt  TA-rich tract