Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaatttcatcgatttagtccaagtagcttattatgtcatgcataatttaaccttataaagtatttgtatgatctatgtag

Basic information

species Zea mays
transcript GRMZM2G333035_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G333035_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g10140.1 (Oryza sativa), 5'ss of exon 1
GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaatttcatcgatttagtccaagtagcttattatgtc-atgcataatttaaccttataaagtatttgtatgatctatgtag
||  |  || || ||||| ||||| || ||||| || ||||||||||||||||||||||| |  ||||| ||| ||||||| || |||||||| || |||||||||| ||  | | || | |  |||   || |||      | | || |  || | | ||  | |||  | || |   ||   |||||| |  ||  ||  || || 
GAAGAATGTGCTTGTGGTCGGTGCCGGGAATTCTGGCATGGAGATCGCCTATGATCTTGCCACGCATGGAGCCCACACCTCCATAGTTGTTCGTAGCCCGgtatgtacatcatatatatttacttatc--ttgcatta---catttcatgatgcat-tcatacctatgtttcatgtttgctataaaagtaatgatagaatacat-ta-

upper sequence: GRMZM2G333035_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g17230.1 (Oryza sativa), 5'ss of exon 1
GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaatttcatcgatttagtccaagtagcttattatgtcatgcataatttaaccttataaagtatttgtatgatctatgtag
||  || || || || |||||||| || || || || |||||||||||||| || ||||| |  ||||| ||| ||||||| || ||||||||||| |||||||||| ||  | |||| | || | |  ||||   |  || | |    ||  || ||| | |      ||   || |    ||  ||     |||| |        
GAAGAGTGTGCTTGTTGTTGGTGCCGGGAACTCTGGCATGGAGATCGCCTACGACCTTGCCACACATGGCGCCCACACCTCCATAGTTGTTCGCAGCCCGgtatgtacatcatatttattcatct-tgcatttatgcacttcattttgggtt-ctgattctttgcaaggtagactatctaagtagtgttgaaatatggtagt-----

upper sequence: GRMZM2G333035_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g10170.1 (Oryza sativa), 5'ss of exon 1
GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaatttcatcgatttagtccaagtagcttattatgtcatgcataatttaaccttataaagtatttgtatgatctatgtag
||  || || || ||||| ||||| || ||||| || ||||||||||| ||||| ||||| |  ||||| ||| ||||||| || |||||||| || |||||||||| |   | |||  | || | |  ||| ||     |||        | | ||| || |  | | |  ||     | |   | |  | | ||    ||     
GAAGAGTGTGCTTGTGGTAGGTGCCGGGAATTCTGGCATGGAGATCGCTTATGACCTTGCCACGCATGGAGCCCACACCTCCATAGTTGTTCGTAGCCCGgtatgtacaacatatttgtttatct-tgcattacactccattatgtgttcaaacctat-atatgtttcttgtttattgttcaagcaatgatggaatacatta-----