1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgagacttattagaagttaacacaaaattgcaatttcattccagctgtgtgttatggttgatttcagcaaagtcttgcacaatctgaagtgttctagctcatttcttaggctatgagatgttgtttctgttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAACACGAGCTTCGGCGTGCTGCTCCCAACTAACCTTGACGAGCAAACGTC
species | Zea mays |
transcript | GRMZM2G324705_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|211517289|gb|FL110064.1|FL110064
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|31612031|gb|CD568653.1|CD568653
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|211517286|gb|FL110061.1|FL110061
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|9953009|gb|BE639592.1|BE639592
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|26456647|gb|CA828230.1|CA828230
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|22936026|gb|BU572301.1|BU572301
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|211517279|gb|FL110054.1|FL110054
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|32929381|gb|CF034193.1|CF034193
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|9953202|gb|BE639785.1|BE639785
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|211517285|gb|FL110060.1|FL110060
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|20508161|gb|BQ279917.1|BQ279917
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAEST: gi|211517282|gb|FL110057.1|FL110057
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|211517278|gb|FL110053.1|FL110053
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|211517287|gb|FL110062.1|FL110062
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|211517284|gb|FL110059.1|FL110059
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGAEST: gi|211517283|gb|FL110058.1|FL110058
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
EST: CCTAGACAACGTTGCAGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGG ATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCGA
genomic: CCTAGACAACGTTGCCGTCAAGAAGCTCTTCACCCCAGACAAACCAAAGGgtatgagact ... ttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCA
tgaagtgttctagctcatttcttaggctatgagatgttgtttctgttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAACACGAGCTTCGGCGTGCTGCTCCCAACTAACCTTGACGAGCAAACGTC
tttctgtt CT-rich tract
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagacttattagaagttaacacaaaattgcaatttcattccagctgtgtgttatggttgatttcagcaaagtcttgcacaatctgaagtgttctagctcatttcttaggctatgagatgttgtttctgttgtcaacagATAACGTGGTGCTGAATGGAGACTTTGAGGAGGGTCCATGGATGTTCCCCAACACGAGCTTCGGCGTGCTGCTCCCAACTAACCTTGACGAGCAAACGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT