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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcccgctgttgcatccggcaagcaggcaaatgtattgacagtctaggcgtcctctccacctgtgcgctgatggttgctgattaggtatgtcatgatgtgcagGAACTGGCGGAGATTCTGTTCCAATCTGCCCTATAGATGGTGCCATGACCATAGCTCCAAGAATAAGCACAAGG

Basic information

species Zea mays
transcript GRMZM2G313536_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G313536_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 3'ss of exon 18
gtgagcccgctgttgcatccggcaagcaggcaaatgtattgacagtctaggcgtcctctccacctgtgcgctgatggttgctgatt---aggtatgtcatgatgtg-----------cagGAACTGGCGGAGATTCTGTTCCAATCTGCCCTATAGATGGTGCCATGA------CCATAGCTCCAAGAATAAGCACAAGG--------------------
        |    || |      |   | |||  |   || | ||| ||   |   |    | || || | ||||| ||||| |||   |  | ||   | |||||           ||||||||||| ||||||||||||||| |||| |||||||||||||| ||        ||||| || | ||||||   | ||                     
--------gtaactggaattataatatacgcatttaacttcatagtataatagaaat----atctttgggttgatgattgctcatttttaactttgctttcatgtgatttctcaatacagGAACTGGCTGAGATTCTGTTCCAAGCTGCTCTATAGATGGTGCCGTGGTGCTGTTCATAGTTCTAGGAATAAAGCCTAGCACGCCTTTGGAAACGGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcctctccacctgtgcgctgatggttgctgattaggtatgtcatgatgtgcagGAACTGGCGGAGATTCTGTTCCAATCTGCCCTATAGATGGTGCCATGACCATAGCTCCAAGAATAAGCACAAGG
                           tgctgat  putative branch site (score: 3)