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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAGCCTCATTCTGTTTTGCCCATAGCTGTTGGGATCCTCGGGGACCTTGTTGGATTCATGCCGCTACCAAAGCTAAAGATTCTTGCAAGCAGTGTGgtgagagactccaccaatgttagcttccaagaagtacacattgatattcttgtttcgaatcacttagcgaccgaatagtagctctgttctcacctggtagtttatttggttttag

Basic information

species Zea mays
transcript GRMZM2G305809_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305809_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g48350.1 (Oryza sativa), 5'ss of exon 4
TTATGAGCCTCATTCTGTTTTGCCCATAGCTGTTGGGATCCTCGGGGACCTTGTTGGATTCATGCCGCTACCAAAGCTAAAGATTCTTGCAAGCAGTGTGgtgagagact--ccaccaatgttagcttccaagaagtacaca-ttgatattcttgtttcgaatcacttagcgaccgaatagtagctctgttctcacc-tggtagtttatttggttttag------------------------------------------------------------------
||||||||| ||||||||||||||||| ||  ||||| ||||   ||| |||||||||||||||||  |||||||| ||||| ||||||||||||||| ||||||   |   |  || |  ||  ||||| || ||||||   || | | | |  | |     ||||     ||   |||     | | || |  |   |    |  || ||| | |||                                                                  
TTATGAGCCGCATTCTGTTTTGCCCATTGCCCTTGGGGTCCTTTTGGAGCTTGTTGGATTCATGCCATTACCAAAGATAAAGGTTCTTGCAAGCAGTGCGgtgaggttcccacttcccagatttccttcctaggagtacattcttaagagtttgatctttcgacactctattactacatatgctatttattgtggctgcgaacatccatctggatatagaggccaggttttaatccattttctaaataaagatatgctctttactggtgaattggtcggtgttag