1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatctttcctcgatctacctttctagcgagtttgggttgaatccctttggagtaaataaacgaaaggttcatactgccttattctctaatggattcattatttggtttgaatttgataatttgggggagGGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATCAATCGAGCCGTGGTGTTTGTTGTCTCTCTCTCTTTAAGATGGTTGCACG
species | Zea mays |
transcript | GRMZM2G179465_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTCATCAAGTTTCAAATCCCCATCTGCGCGAGGAACTCCTCTCTCAAG GGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATCEST: gi|211010124|gb|FL112581.1|FL112581
genomic: CCCTCATCAAGTTTCAAATCCCCATCTGCGCGAGGAACTCCTCTCTCAAGgtatctttcc ... tttgggggagGGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATC
EST: CCCTCATCAAGTTTCAAATCCCCATCTGCGCGAGGAACTCCTCTCTCAAGGGAGEST: gi|211010127|gb|FL112584.1|FL112584
genomic: CCCTCATCAAGTTTCAAATCCCCATCTGCGCGAGGAACTCCTCTCTC-A---AGgtatctttcc ... tttgggg
EST: CCCTCATCAAGTTTCAAATCCCCATCTGCGCGAGGAACTCCTCTCTCAAG GGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATC
genomic: CCCTCATCAAGTTTCAAATCCCCATCTGCGCGAGGAACTCCTCTCTCAAGgtatctttcc ... tttgggggagGGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATC
tgccttattctctaatggattcattatttggtttgaatttgataatttgggggagGGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATCAATCGAGCCGTGGTGTTTGTTGTCTCTCTCTCTTTAAGATGGTTGCACG
tttgaatttgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctttcctcgatctacctttctagcgagtttgggttgaatccctttggagtaaataaacgaaaggttcatactgccttattctctaatggattcattatttggtttgaatttgataatttgggggagGGGAAATCGCTCGTAACTGTGCAAACACTTGTTGCTCGACCCCCCTCAATCAATCGAGCCGTGGTGTTTGTTGTCTCTCTCTCTTTAAGATGGTTGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG