1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCCTGGTTCTGGCAATGCTTTGGAAAGATTACTCGCCTTGGAACTCGAGCTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagtacattcaatgggcattgttatttcttttcatgcctgataatctaatgaagcatatgccttttttttcttttcttttcttatctagagaact...
species | Zea mays |
transcript | GRMZM2G179421_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAGEST: gi|120479870|gb|EH210656.1|EH210656
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
EST: CTTGCAGAGGCTTTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTTTTGAAGCAGCACAATGATGAAGCAGCGATTTTCCAAAGCTTCAGEST: gi|211190020|gb|FL186110.1|FL186110
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
EST: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTCTTGAAGCAGCACAATGATGAAGCGGCGATCTTCCAAAGCTTCAGEST: gi|32945711|gb|CF050530.1|CF050530
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
EST: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTCTTGAAGCAGCACAATGATGAAGCGGCGATCTTCCAAAGCTTCAGEST: gi|60343676|gb|DN210649.1|DN210649
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
EST: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAGEST: gi|32936531|gb|CF041350.1|CF041350
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
EST: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTCTTGAAGCAGCCCAATGATGAAGCGGCGATCTTCCAAAGCTTCAGEST: gi|78021778|gb|DV490165.1|DV490165
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
EST: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAG TTCATTCTTGAAGCAGCACAATGATGAAGCGGCGATCTTCCAAAGCTTCAG
genomic: CTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagta ... tccttgttagTTCATTCTTGAAGCAGCACAATGATGAAGCAGCGATCTTCCAAAGCTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGGTTCTGGCAATGCTTTGGAAAGATTACTCGCCTTGGAACTCGAGCTTGCAGAGGCTCTCCAAGCAAAGAAGAAAACAAACATCCTTTTCCAGAGgtaactagtacattcaatgggcattgttatttcttttcatgcctgataatctaatgaagcatatgccttttttttcttttcttttcttatctagagaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA