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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAACCTTGTGTCATTAAGAGGTTACTGTGACGGGCAGGAGGAGTGTTTTCTTGTGTATGAGCTGTGCATCAACGGTAACCTATCAGAATGGCTATTTGgtgagtaacatgatagcctaaacatttaaagtgacgactagaactctatacgttgttgcataattgaagaaaaaaaattttgattctag

Basic information

species Zea mays
transcript GRMZM2G179268_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179268_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g39180.1 (Oryza sativa), 5'ss of exon 5
CCGAACCTTGTGTCATTAAGAGGTTACTGTGACGGGCAGGAGGAGTGTTTTCTTGTGTATGAGCTGTGCATCAACGGTAACCTATCAGAATGGCTATTTGgtgagtaacatgatagcctaaacatttaaagtgacgactagaactctatacgttgttgcataattgaagaaaaaaaatt--ttgattctag
|| |||||||||||| |||||||||| || || ||||||||||| ||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||||| | |      ||   ||   ||    | |        |||| |   | ||  | ||||     ||| |||||  ||| ||  ||
CCAAACCTTGTGTCACTAAGAGGTTATTGCGATGGGCAGGAGGAATGTTTTCTTGTATATGAGTTATGTATCAACGGTAACCTGTCAGAATGGCTATTTGgtgagtacctt-----tcttggcaaacaagagcatg-------ttctacatactcttatacaattactagaaataaattgtttgcttacag