1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGATGCGCACGACGAGCCGTGTGATCCAGGAGACGATGCGGGTGGCGTCCATCCTGTCCTTCACCTTCCGGGAGGCCGTGGAGGACGTGGAGTACCAAGgtgaggcgtcaatcatactcatgcggtcatgcccctcgctgtcaaaaaaaaaaaaaaaaactcccgccaccgtttcacgttggattggaggcgggggcag...
species | Zea mays |
transcript | GRMZM2G179147_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTACCAAG GGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCCEST: gi|211138229|gb|FL464602.1|FL464602
genomic: TGGAGTACCAAGgtgaggcgtc ... ctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCC
EST: CATCCTGTCCTTCACCTTCCGGGAGGCCGTGGAGGACGTGGAGTACCAAG GGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCCEST: gi|71423547|gb|DR806071.1|DR806071
genomic: CATCCTGTCCTTCACCTTCCGGGAGGCCGTGGAGGACGTGGAGTACCAAGgtgaggcgtc ... ctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCC
EST: CATCCTGTCCTTCACCTTCCGGGAGGCCGTGGAGGACGTGGAGTACCAAG GGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCC
genomic: CATCCTGTCCTTCACCTTCCGGGAGGCCGTGGAGGACGTGGAGTACCAAGgtgaggcgtc ... ctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGATGCGCACGACGAGCCGTGTGATCCAGGAGACGATGCGGGTGGCGTCCATCCTGTCCTTCACCTTCCGGGAGGCCGTGGAGGACGTGGAGTACCAAGgtgaggcgtcaatcatactcatgcggtcatgcccctcgctgtcaaaaaaaaaaaaaaaaactcccgccaccgtttcacgttggattggaggcgggggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccgc