1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTTCATAAATTCCAAGTTCGGAACACTGATGGAATATTCAGCTTATGTTGGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatgcatagtttttcactaaggtctgaaatgtacgatctcctggcatgggtttgactagtatggtttacctaccgtaggatcataaggctcaac...
species | Zea mays |
transcript | GRMZM2G178227_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|60393978|gb|DN226848.1|DN226848
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|76290494|gb|DV030062.1|DV030062
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|31353537|gb|CD437894.1|CD437894
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|20802738|gb|BQ293788.1|BQ293788
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|78087329|gb|DV515722.1|DV515722
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|8367536|gb|BE050481.1|BE050481
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|31358406|gb|CD442763.1|CD442763
genomic: GGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: CATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCTEST: gi|26456323|gb|CA827906.1|CA827906
genomic: CATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
EST: GATCTCACATAGTCATAAAGCTACCAG AAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
genomic: GATCTCACATAGTCATAAAGCTACCAGgtatgtcatg ... taattgacagAAAATACAGAGAATACTTGGAACATATTTTGGAATATCTGACATCATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCATAAATTCCAAGTTCGGAACACTGATGGAATATTCAGCTTATGTTGGCTGTTTCTCCCAGACGGACAAGATCTCACATAGTCATAAAGCTACCAGgtatgtcatgcatagtttttcactaaggtctgaaatgtacgatctcctggcatgggtttgactagtatggtttacctaccgtaggatcataaggctcaac
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT