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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgctgttgttgtttgtaaagcatcagttcagttcaaaccatcttggcttagcgcttgctgtatatttgcccccag

Basic information

species Zea mays
transcript GRMZM2G177026_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 6
ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgct--gttgttgtt-tgtaaagc--atc----agttca--gttcaaaccatcttggcttagcgct-tgctgtatatttgcccccag-----------------------
|||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| || | ||| | ||||| |||||||| || || |||||| | ||| | ||| | || || | | | || ||| |||||| || ||||| || | | ||| || ||| || | | |
GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaactacgagctgaaccaggtcattacggtattatgccgatctgcgagttcatacttgaaaccgtcgtt-cgtagtgccacactgataatccgttgctggctgttcattctatcctacctcag

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g06760.2 (Oryza sativa), 5'ss of exon 6
ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgct--gttgttgtt-tgtaaagc--atc----agttcag--ttcaaaccatcttggcttagcgct-tgctgtatatttgcccccag-----------------------
| ||||| ||||||||||||||||||||||||||||| || | ||| | ||||| |||||||| || || |||||| | ||| | ||| | || || | | | || ||| |||||| || ||||| || | | ||| || ||| || | | |
-----------------------GCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGTAAAAACTACGAGCTGAACCAGgtcattacggtattatgccgatctgcgagttcatacttgaaaccgtcgtt-cgtagtgccacactgataatccgttgctggctgttcattctatcctacctcag

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G43910.1 (Glycine max), 5'ss of exon 6
ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgctgttgttgtttgtaaagcatcagttcagttcaaaccat-cttggcttagcgcttgctgtatatttgcccccag
||||| ||||| ||||||||||| || || || |||||| | ||||||||||||||||| || || || |||| || || ||||| || || ||||| | | | || ||| || ||| | | || || ||| ||| || | ||| || || |||||
GCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCACCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgtccctgtt--attcta----gttattcttttagatgttccat----gtataaagcatattttgtttattattttttgctcctttgcag----

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G38660.1 (Glycine max), 5'ss of exon 6
ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgctgttgttgtttgtaaagcatcagttcagttcaaaccat-cttggcttagcgcttgctgtatatttgcccccag
||||| ||||| ||||||||||| || || || |||||| | |||||||||||||||||||| || || |||| || || ||||| || || ||||| | | | | | | || || | | ||| || ||| ||| || | ||| || || |||||
GCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgtccctgtt---attttagatattcttttagatgttccat-------gtataaagcatattttgtttattattttttgctcctttgcag----

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G55070.1 (Arabidopsis thaliana), 5'ss of exon 6
ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgctgttgttgtttgtaaagcatcagttcagttc--aaaccatcttggcttagc---gcttgctgtat--atttgcccccag----------------------------------------------------------------
|||||||| || ||||||||||| || || | |||||||| |||||||| |||||||| || ||||| ||||| || ||||| |||||||| ||||| | ||| | | | || | | | || || | | || ||||| | | || | | ||
GCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAACCCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGgtttgattctgttcttgtacaacttcagcttctctgttctttttctctttttagaatctttttctattagcttgatcagttacatcagtctatcctatacagttcaaaaaatttaaagttgggttactttttttatttatttgatgggtaaatgaacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105967|gb|DV524385.1|DV524385
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|6851574|gb|AW352584.1|AW352584
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGATGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|149055252|gb|EE156180.2|EE156180
EST:     CTGAGAACCCGCCTCAGGTTTTGCCGAACGGCTATGTTTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|44681897|gb|CK786945.1|CK786945
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|28986997|gb|CB351413.1|CB351413
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATG-CGGCCAAGATTACATGCCCCAG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGC-AAGATTACATGCCCCAG
EST: gi|211099632|gb|FL031900.1|FL031900
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|29544151|gb|CB604531.1|CB604531
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|71767836|gb|DR965773.1|DR965773
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTTTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|74233968|gb|DT641882.1|DT641882
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|211099634|gb|FL031902.1|FL031902
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCA-GATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|71768608|gb|DR966545.1|DR966545
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|101391428|gb|EB817649.1|EB817649
EST:     CTGAGAACCCGCCTCAGGTTTTGCCGAACGGCTATGTTTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|211099631|gb|FL031899.1|FL031899
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|60343650|gb|DN210623.1|DN210623
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|60338261|gb|DN205234.1|DN205234
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|50328588|gb|CO523714.1|CO523714
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|71427364|gb|DR808414.1|DR808414
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|78113218|gb|DV531612.1|DV531612
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|60345773|gb|DN212746.1|DN212746
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|76921420|gb|DV168575.1|DV168575
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|91872489|gb|EB402446.1|EB402446
EST:     CTGAGAACCCGCCTCAGGTTTTGCCGAACGGCTATGTTTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|86474472|gb|DY240842.1|DY240842
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|71768607|gb|DR966544.1|DR966544
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|76013349|gb|DT940519.1|DT940519
EST:     CTGAGAACCCGCCTCAGGTTTTGCCGAACGGCTATGTTTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|211125054|gb|FL439189.1|FL439189
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|14244938|gb|BG842876.2|BG842876
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|14242967|gb|BG840141.2|BG840141
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|211099633|gb|FL031901.1|FL031901
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|37394100|gb|CF634320.1|CF634320
EST:     CTGAGAACCCGCCTTAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|19350920|gb|BM895452.1|BM895452
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGATGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|76013373|gb|DT940543.1|DT940543
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
EST: gi|78090100|gb|DV518474.1|DV518474
EST:     CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAG                         GCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG
genomic: CTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactc ... ttgcccccagGCGCTTCAAGAGATGTCCAAGAAAAATGACGGCAAGATTACATGCCCCAGG