1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaggtagtctaattatttctggttacaagatgttactatggcctgctatctatgtattgcaatgctgaccaagcaatttctgttgtgcaaatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACTAATAGCTTGTAATGTGGTGTTTGGAGCACAG
species | Zea mays |
transcript | GRMZM2G173321_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|18180982|gb|BM382192.1|BM382192
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|78074656|gb|DV503090.1|DV503090
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|78093455|gb|DV521829.1|DV521829
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|21626184|gb|BQ621105.1|BQ621105
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|78544304|gb|DV621802.1|DV621802
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|211213891|gb|FL469119.1|FL469119
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|211111375|gb|FK984521.1|FK984521
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGCTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|60345741|gb|DN212714.1|DN212714
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|78093454|gb|DV521828.1|DV521828
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|71333334|gb|DR803728.1|DR803728
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|60397540|gb|DN230356.1|DN230356
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAAAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTEST: gi|93281470|gb|EB673734.1|EB673734
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACT
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|20507481|gb|BQ279651.1|BQ279651
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|71333335|gb|DR803729.1|DR803729
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|78544746|gb|DV622244.1|DV622244
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACEST: gi|213170597|gb|FM195452.1|FM195452
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
EST: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAG GTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
genomic: TTGATGGAGATTGCTTGGTCTTCCAGCTGACTGAGAGAACAAAGTTCAAGgtgagtgaca ... aatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAAC
gctatctatgtattgcaatgctgaccaagcaatttctgttgtgcaaatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACTAATAGCTTGTAATGTGGTGTTTGGAGCACAG
tgctgac putative branch site (score: 25)
tatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggtagtctaattatttctggttacaagatgttactatggcctgctatctatgtattgcaatgctgaccaagcaatttctgttgtgcaaatggtgcagGTAATCATAATTAGAGCAAGTTCTTACTATGAAAGTGAGGACTGATGAAACTAATAGCTTGTAATGTGGTGTTTGGAGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - -ttctggt
- - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - cctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcaa