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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaattcatcgattaaattagtccaagtagcttattatgtcatgcataatttaaccttataaaggaattatatg...

Basic information

species Zea mays
transcript GRMZM2G172300_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107761_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g10140.1 (Oryza sativa), 5'ss of exon 1
GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaattcatcgattaaattagtccaagtagcttattatgtcatgcataatttaaccttataaaggaattatatg-
||  |  || || ||||| ||||| || ||||| || ||||||||||||||||||||||| |  ||||| ||| ||||||| || |||||||| || |||||||||| ||  | | || | |  |||   | |||    |    |  | ||   |      | | |||||  |  | |||   ||   |   | || ||  
GAAGAATGTGCTTGTGGTCGGTGCCGGGAATTCTGGCATGGAGATCGCCTATGATCTTGCCACGCATGGAGCCCACACCTCCATAGTTGTTCGTAGCCCGgtatgtacatcatatatatttacttatct-tgcattacatttcatgatgcattcatacctatgtttcatgtttgctataaaagtaatgatagaatacatta

upper sequence: GRMZM2G107761_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g17230.1 (Oryza sativa), 5'ss of exon 1
GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaattcatcgattaaattagtccaagtagcttattatgtcatgcataatttaacct-tataaaggaattatatg
||  || || || || |||||||| || || || || |||||||||||||| || ||||| |  ||||| ||| ||||||| || ||||||||||| |||||||||| ||  | |||| | || | |  ||| ||  | |  |||        |   |  ||      |  |  || |||    | |  |   ||  ||  
GAAGAGTGTGCTTGTTGTTGGTGCCGGGAACTCTGGCATGGAGATCGCCTACGACCTTGCCACACATGGCGCCCACACCTCCATAGTTGTTCGCAGCCCGgtatgtacatcatatttattcatct-tgcatttatgcacttcattttgggttctgattctttgcaaggtagactatctaagtagtgttgaaatatggtagt

upper sequence: GRMZM2G107761_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g10170.1 (Oryza sativa), 5'ss of exon 1
GAGAAGGGTTCTGGTGGTTGGTGCTGGAAATTCCGGGATGGAGATCGCCTATGATCTTGCAAACCATGGTGCCGACACCTCGATTGTTGTTCGCAGTCCGgtatgtatattttgtttactaatgtataaattcatcgattaaattagtccaagtagcttat-tatgtcatgcataatttaaccttataaaggaattatatg-
||  || || || ||||| ||||| || ||||| || ||||||||||| ||||| ||||| |  ||||| ||| ||||||| || |||||||| || |||||||||| |   | |||  | || |   | | ||     | |  |  || ||      ||| | | |  |  ||  || || |  || | ||||| | ||  
GAAGAGTGTGCTTGTGGTAGGTGCCGGGAATTCTGGCATGGAGATCGCTTATGACCTTGCCACGCATGGAGCCCACACCTCCATAGTTGTTCGTAGCCCGgtatgtacaacatatttgtttatcttgcattacactccattatgtgttcaaacctatatatgtttcttgtttattgttcaagca-atgatggaat-acatta