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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatagtttgaagtgctgcaactttttgctcgaatgacgtcgatacaaatatacgtggtaccgtacgttcttatatgtttgtgaaataaataatccgcagTGCCTTGGCGACCCAATGAAACCCTTGTACAAGGGCGGCATTGTCCAGAACAGCGAGTTCAACAGCGGACTGATGGGCTGGTCGACACACCGGAACGTCA

Basic information

species Zea mays
transcript GRMZM2G170839_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G170839_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g21110.1 (Oryza sativa), 3'ss of exon 2
---gaatagtttgaagtgctgcaactttttgctcgaatgacgtcgatacaaatatacgtggtaccgtacgttcttatatgtttgtgaaataaataatccgcagTGCCTTGGCGACCCAATGAAACCCTTGTACAAGGGCGGCATTGTCCAGAACAGCGAGTTCAACAGCGGACTGATGGGCTGGTCGACACACCGGAACGTCA
    || ||    |  | | |||  | | ||  |   | |     ||  |||| | | || ||  || |   |     ||  ||      | ||| || |||||||||| |||| || ||||| ||  ||||||| ||||||||  |||||||| |||||||||||||||| || ||||||||||| || |||||  || |||
aacaaaaagcaaaatttacggcatttatgtgtaccgttaaaaa-aattgaaatgttcctg-taatgttcaaacgagcttgcatgcatgccacata-tctgcagTGCCTTCGCGATCCGATGAAGCCGCTGTACAACGGCGGCATCATCCAGAACGGCGAGTTCAACAGCGGCCTCATGGGCTGGTCCACGCACCGCGACATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatatacgtggtaccgtacgttcttatatgtttgtgaaataaataatccgcagTGCCTTGGCGACCCAATGAAACCCTTGTACAAGGGCGGCATTGTCCAGAACAGCGAGTTCAACAGCGGACTGATGGGCTGGTCGACACACCGGAACGTCA
                      ttcttatatgtttgtg  TA-rich tract