1 5' 3' |
GTGCCGTCTGTGACGGTGCCGCCCCCATCTTCCGTAACAAGCCCATCGCCGTCATAGGCGGCGGCGACTCCGCTATGGAGGAGTCCAATTTCCTCACCAAgtacggctcccacgtctacatcatccaccgccgcaataccttccgtgcttccaagatcatgcaggccagggcgcttgagaaccccaaaattaaggtcctc...
species | Zea mays |
transcript | GRMZM2G164948_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCATAGGCGGCGGCGACTCCGCTATGGAGGAGTCCAATTTCCTCACCAA GGTGCATGGCTGCATTGGACGCTGAGCACTACCTGCAGGAGATCGGTGCACEST: gi|4804295|gb|AI666161.1|AI666161
genomic: GTCATAGGCGGCGGCGACTCCGCTATGGAGGAGTCCAATTTCCTCACCAAgtacggctcc ... gatgttgcagGGTGCATGGCTGCATTGGACGCTGAGCACTACCTGCAGGAGATCGGTGCAC
EST: GTCATAGGCGGCGGCGACTCCGCTATGGAGGAGTCCAATTTCCTCACCAA GGTGCATGGCTGCATTGGACGCTGAGCACTACCTGCAGGAGATCGGTGCAC
genomic: GTCATAGGCGGCGGCGACTCCGCTATGGAGGAGTCCAATTTCCTCACCAAgtacggctcc ... gatgttgcagGGTGCATGGCTGCATTGGACGCTGAGCACTACCTGCAGGAGATCGGTGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCGTCTGTGACGGTGCCGCCCCCATCTTCCGTAACAAGCCCATCGCCGTCATAGGCGGCGGCGACTCCGCTATGGAGGAGTCCAATTTCCTCACCAAgtacggctcccacgtctacatcatccaccgccgcaataccttccgtgcttccaagatcatgcaggccagggcgcttgagaaccccaaaattaaggtcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc