1 5' 3' | 2 5' 3' | 3 5' 3' |
...atccaggattaaaataattttccgtacggcacgcctgcagtactcattctcgccagccctgagcccctgatatatgacacgcttttcattgttcacacagTTTCGACCGTGACTGTTGCTGGAGGTCAGGCGTGAAGCTGCTGCCCATCGAATGCCACAGCTCAAACAACTTCACCCTCACACGGGAGGCGCTCGTGTCG
species | Zea mays |
transcript | GRMZM2G164405_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCGCTGACCCGGGCGACGCCTACCTCGTGCCGACGCCATACTACCCAGC TTTCGACCGTGACTGTTGCTGGAGGTCAGGCGTGAAGCTGCTGCCCATCGA
genomic: CTCGCTGACCCGGGCGACGCCTACCTCGTGCCGACGCCATACTACCCAGCgtatgtctcg ... gttcacacagTTTCGACCGTGACTGTTGCTGGAGGTCAGGCGTGAAGCTGCTGCCCATCGA
attctcgccagccctgagcccctgatatatgacacgcttttcattgttcacacagTTTCGACCGTGACTGTTGCTGGAGGTCAGGCGTGAAGCTGCTGCCCATCGAATGCCACAGCTCAAACAACTTCACCCTCACACGGGAGGCGCTCGTGTCG
ccctgat putative branch site (score: 2)
tgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccaggattaaaataattttccgtacggcacgcctgcagtactcattctcgccagccctgagcccctgatatatgacacgcttttcattgttcacacagTTTCGACCGTGACTGTTGCTGGAGGTCAGGCGTGAAGCTGCTGCCCATCGAATGCCACAGCTCAAACAACTTCACCCTCACACGGGAGGCGCTCGTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - aaaataa
- - - - - - - - - - - - - - - - gcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - agccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt