1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gattatctagataaaacaccggcaccatttggtgagcatatccacgaaccctttgtttgtgcatcaaatcagtatggttgatttgtttctctacgtccagTTCTTGGAAAAGGCTACTTGCATTGATTCGGCAGTGGGAAGTGCCCTGGGATGACACCTTAGATACAGTAGTTTCTTACAAAATTAGTCAG
species | Zea mays |
transcript | GRMZM2G163766_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gaaccctttgtttgtgcatcaaatcagtatggttgatttgtttctctacgtccagTTCTTGGAAAAGGCTACTTGCATTGATTCGGCAGTGGGAAGTGCCCTGGGATGACACCTTAGATACAGTAGTTTCTTACAAAATTAGTCAG
ggttgat putative branch site (score: 5)
tttgtttctct CT-rich tract
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattatctagataaaacaccggcaccatttggtgagcatatccacgaaccctttgtttgtgcatcaaatcagtatggttgatttgtttctctacgtccagTTCTTGGAAAAGGCTACTTGCATTGATTCGGCAGTGGGAAGTGCCCTGGGATGACACCTTAGATACAGTAGTTTCTTACAAAATTAGTCAG
- - - - -gataaaac
- - - - - - - - - -cggcacc
- - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct