Sequence
atgc intronic sequence ATGC exonic sequenceGACACCTGAGAAGAGGTTCTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgttagtttgccgttgacctgttgtcttgaggtattcaagtggtgaaacttgcttgactgttttcaacattcatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G163210_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g47320.2 (Oryza sativa), 5'ss of exon 17
-GACACCTGAGAAGAGGTTCTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgtta-gtttgccgttgacctgttgtc------------------ttgaggtattcaagtggtgaaacttgcttgactgttttcaacattcatttcag
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GGACAT-TGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTACCAGTTGAGCAAATGgtatgctacatttgctgtttattttttagcaaagataaatgctgtttattgaggcattcatgtgatgaaatctgcttgattgctgttaacattcattccag
upper sequence: GRMZM2G163210_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g47130.1 (Oryza sativa), 5'ss of exon 16
-GACACCTGAGAAGAGGTTCTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgtta-gtttgccgttgacctgttgtc------------------ttgaggtattcaagtggtgaaacttgcttgactgttttcaacattcatttcag
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GGACAT-TGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATCGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTTCCAGTTGAGCAAATGgtatgctacatttgctgtttattttttagcaaagctaaatgctgtttattgaggcattcatgtgatgaaatctgcttgattgctgttaacattcattccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32805509|gb|CD957743.1|CD957743EST: CAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATG GAGGGCTCTGCATTACCACCTCTGTCATGCGTAAACGATGCTTCTGTGTTA
genomic: CAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgttagt ... ttcatttcagGAGGGCTCTGCATTACCACCTCTGTCATGCGTAAACGATGCTTCTGTGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACACCTGAGAAGAGGTTCTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgttagtttgccgttgacctgttgtcttgaggtattcaagtggtgaaacttgcttgactgttttcaacattcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA