1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgagtgaacaaactgactgatggaaagtcgcagcacaacatgaaccttttgtttcttgcacttctgaacattttcttgcaacttattccctctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGGAAAGGCCGCAAAGTTTGAGGAAATAAACTAGTAACGTTGCTCCTTGCGG
species | Zea mays |
transcript | GRMZM2G161087_T01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|87155360|gb|DY400149.1|DY400149
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|32931261|gb|CF036073.1|CF036073
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAGGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|32933316|gb|CF038128.1|CF038128
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|22546559|gb|BU098870.1|BU098870
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|26559353|gb|CA831588.1|CA831588
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|32934128|gb|CF038940.1|CF038940
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|113701833|gb|EE679337.1|EE679337
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGGEST: gi|32932425|gb|CF037237.1|CF037237
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAGGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGGEST: gi|5847566|gb|AW000645.1|AW000645
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCNCCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGGEST: gi|76917042|gb|DV166650.1|DV166650
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGGEST: gi|71772591|gb|DR970520.1|DR970520
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG GACGCATCTTCCCCCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
cttttgtttcttgcacttctgaacattttcttgcaacttattccctctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGGAAAGGCCGCAAAGTTTGAGGAAATAAACTAGTAACGTTGCTCCTTGCGG
cttattccctcttt CT-rich tract
aacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaacaaactgactgatggaaagtcgcagcacaacatgaaccttttgtttcttgcacttctgaacattttcttgcaacttattccctctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGGAAAGGCCGCAAAGTTTGAGGAAATAAACTAGTAACGTTGCTCCTTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG