Sequence
atgc intronic sequence ATGC exonic sequence...gtgcagattgcacttttacggtgcagattggctgaggagagttaatattgaacttatgtttgccagggttatctaaattttgcaggcttttgtttgccagGTTCATCTAGTTGTTGACCAACTGCTGGAGCGCCCAGCCCAGGACAGGCACTCCACTCCACTCCACTCGTGGTAGGAACTGGAACTGAAGCAGCTGCTGT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211200779|gb|FL002593.1|FL002593EST: CAGGGTAGTGCGGTTGTGCGTGTGTTGGTGGCCTGGTTCTAGCAACCGAG GTTCATCTAGTTGTTGACCAACTGCTGGAGCGCCCAGCCCAGGACAGGCAC
genomic: CAGGGTAGTGCGGTTGTGCGTGTGTTGGTGGCCTGGTTCTAGCAACCGAGgtacatgctc ... tgtttgccagGTTCATCTAGTTGTTGACCAACTGCTGGAGCGCCCAGCCCAGGACAGGCAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgaacttatgtttgccagggttatctaaattttgcaggcttttgtttgccagGTTCATCTAGTTGTTGACCAACTGCTGGAGCGCCCAGCCCAGGACAGGCACTCCACTCCACTCCACTCGTGGTAGGAACTGGAACTGAAGCAGCTGCTGT
atctaaa putative branch site (score: 3)
cttttgttt putative PPT
ttatctaaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcagattgcacttttacggtgcagattggctgaggagagttaatattgaacttatgtttgccagggttatctaaattttgcaggcttttgtttgccagGTTCATCTAGTTGTTGACCAACTGCTGGAGCGCCCAGCCCAGGACAGGCACTCCACTCCACTCCACTCGTGGTAGGAACTGGAACTGAAGCAGCTGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-tgcagat
- - - - tgcactt
- - - - - - - - - -ggtgcag
- - - - - - - - - - - - - - - gctgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaggc