Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactcatcgatcggtccgggttcatctgggtggtttttttttttgatttggttagggttttgtttgtactgatatatggagaggcgcgccgccgcctgcatctgtgttctcgcgtgcctgtgcag

Basic information

species Zea mays
transcript GRMZM2G157675_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157675_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g42090.1 (Oryza sativa), 5'ss of exon 1
---------------------------------------------------------------GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactcatcgatcggtccgggttcatctgggtggtttttttttttgatttggttagggttttgtttgtactgatatatggagaggcgcgccgccgcctgcatctgtgttctcgcgtgcctgtgcag
                                                               |||||||||||||||||||||||||||| ||||| |||||   |  | ||  |    |||| | |  || | ||     |||  || ||||| | ||||||||   ||   ||  | |     ||      |    | ||    |||    | | |||  |||||||
CTGCCATCTAGCTAGCAAAGATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCTCCCCCGTgtaactaagc-tctctaaacccggttgctgctagctg-----tttaattaatttgatgagggtttttggtgagatgtgagaactgaagaattaacaaatcttgatcttgt----ttgtgtgtgtgtgcag

upper sequence: GRMZM2G157675_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g42110.1 (Oryza sativa), 5'ss of exon 1
-------------------------------------------GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactcatcgatcggtccgggttcatctgggtggtttttttttttgatttggttagggttttgtttgtactgatatatggagaggcgcgccgccgcctgcatctgtgttctcgcgtgcctgtgcag
                                           ||||||||||||||||||||||||||||  |||| |||||   |    |   ||    |  |   ||| |   |    | | | |     ||   ||| |    |        | | ||   ||    |    | |  ||  | | | |      |           
ATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCGCCCCCGTgtaattaa--gttcttctaatcaagccgatc-gatcgaccatctctctctgcatg--caggataggatacaatacaacaaattctgaaattcatttctggttgtgtgtatatatgtatgcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344463|gb|FL201420.1|FL201420
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAACC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|31628388|gb|CD526584.1|CD526584
EST:     GCAATGNCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GNTGACGTTCTGGCGGATCTACAAGGNCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211162574|gb|FL132733.1|FL132733
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|28188031|gb|CB179641.1|CB179641
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGCCGTTCTGGCGGATCTACAAGGCCAAGGACGCGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|37361467|gb|CF602756.1|CF602756
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211342073|gb|FL201410.1|FL201410
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|31627932|gb|CD526360.1|CD526360
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|28188247|gb|CB179857.1|CB179857
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211344467|gb|FL201424.1|FL201424
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAACC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211342078|gb|FL201415.1|FL201415
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211342077|gb|FL201414.1|FL201414
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAACC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|37361336|gb|CF602625.1|CF602625
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211344465|gb|FL201422.1|FL201422
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAACC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211342079|gb|FL201416.1|FL201416
EST:     GCAATGTCATCTCCTTCGGCCTSTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|30160668|gb|CB924397.1|CB924397
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|148934526|gb|EC878568.2|EC878568
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|31628107|gb|CD526445.1|CD526445
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211342076|gb|FL201413.1|FL201413
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|14245092|gb|BG873674.1|BG873674
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211344464|gb|FL201421.1|FL201421
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211342075|gb|FL201412.1|FL201412
EST:     GCAATGTCATCTCCTTCGGMMTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|71317142|gb|DR795259.1|DR795259
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211344466|gb|FL201423.1|FL201423
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|28187755|gb|CB179365.1|CB179365
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211344462|gb|FL201419.1|FL201419
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAACC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|28188001|gb|CB179611.1|CB179611
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|24462465|gb|BM659996.1|BM659996
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|28187611|gb|CB179221.1|CB179221
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC
EST: gi|211344460|gb|FL201417.1|FL201417
EST:     GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT                         GCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAACC
genomic: GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactc ... gcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCC