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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGATCTTCCTGGGTTCGTTATTCGGGGATCTTGTTGAATCTCTGATCAAGCGCGACGCTGGTGTGAAGGACTCCGGATCGCTCATTCCTGGTCATGgtaaagcagcgttaatcgcccctatccccttcttttcccttcacttcttgtactgcatcgaagtaaccgtccttggagaaaatatataccagtaggagaggggagaaatgcattgccgtgatgtattcatattctattctatcagcatgtcatacttcatgcatgaatgtgatacgctgctatgccacaatgcag

Basic information

species Zea mays
transcript GRMZM2G156983_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053711_T05 (Zea mays), 5'ss of exon 5
lower sequence: EFJ25134 (Selaginella moellendorffii), 5'ss of exon 6
ATCCTGATCTTCCTGGGTTCGTTATTCGGGGATCTTGTTGAATCTCTGATCAAGCGCGACGCTGGTGTGAAGGACTCCGGATCGCTCATTCCTGGTCATGgtaaagcagcgttaatcgcccctatccccttcttttcccttcacttcttgtac-tgcatcgaagtaaccgtccttggagaaaatatataccagtaggagaggggagaaatgcattgccgtgatgtattcatattctattctatcagcatgtcatacttcatgcatgaatgtgatacgctgctatgccacaatgcag
 | ||  ||||| |||  ||  | || || |||||    || ||  ||||||| ||||||||||| ||||| || ||||||  ||||||||| || ||||||||   |   |||   ||   |  ||  || ||||        |   | | | | ||  |                                                                                                                                       
GTGCTCGTCTTCATGGCATCTCTTTTTGGTGATCTCACAGAGTCGATGATCAAACGCGACGCTGGCGTGAAAGATTCCGGAAGGCTCATTCCAGGCCATGgtaag--aatcttataggctagtgacctattttttttttgctgatcgctatgcctacacag---------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G053711_T05 (Zea mays), 5'ss of exon 5
lower sequence: EFJ29916 (Selaginella moellendorffii), 5'ss of exon 6
ATCCTGATCTTCCTGGGTTCGTTATTCGGGGATCTTGTTGAATCTCTGATCAAGCGCGACGCTGGTGTGAAGGACTCCGGATCGCTCATTCCTGGTCATGgtaaagcagcgttaatcgcccctatccccttcttttcccttcacttcttgtactgcatcgaagtaaccgtccttggagaaaatatataccagtaggagaggggagaaatgcattgccgtgatgtattcatattctattctatcagcatgtcatacttcatgcatgaatgtgatacgctgctatgccacaatgcag
 | ||  ||||| |||  ||  | ||||| |||||    || ||  ||||||| ||||||||||| ||||| || ||||||  ||||||||| || ||||||||   |   |||   ||   |  ||  || ||||    | |   ||    || ||  |                                                                                                                                       
GTGCTCGTCTTCATGGCATCTCTTTTCGGTGATCTCACAGAGTCGATGATCAAACGCGACGCTGGCGTGAAAGATTCCGGAAGGCTCATTCCAGGCCATGgtaag--aatcttataggctagtgacctttttttttttgctgatcgctatgcctacacag---------------------------------------------------------------------------------------------------------------------------------------