1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgatgctgtttatcatgcctaagtgcctaacaacttaatatgtatattgtatacttgtatattgacattttagtctcatattgttgtcacttgatacagGGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAGGAGCGGGCAGCCTTAAACATGGGGATTGGATGGAGGGGATTGAACAGGA
species | Zea mays |
transcript | GRMZM2G155580_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAG GGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAGEST: gi|31611948|gb|CD568570.1|CD568570
genomic: CTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAGgtgagtgaac ... cttgatacagGGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAG
EST: CTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAG GGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAGEST: gi|31611897|gb|CD568519.1|CD568519
genomic: CTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAGgtgagtgaac ... cttgatacagGGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAG
EST: CTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAG GGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAG
genomic: CTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAGgtgagtgaac ... cttgatacagGGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAG
tattgtatacttgtatattgacattttagtctcatattgttgtcacttgatacagGGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAGGAGCGGGCAGCCTTAAACATGGGGATTGGATGGAGGGGATTGAACAGGA
tatattgacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgctgtttatcatgcctaagtgcctaacaacttaatatgtatattgtatacttgtatattgacattttagtctcatattgttgtcacttgatacagGGATTCACAACATATGCTGAGAGGAGGATTGTTGAGGTTGTGCAAGGGGAGGAGCGGGCAGCCTTAAACATGGGGATTGGATGGAGGGGATTGAACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG