1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTTGGTTATTATTCCTGTATACCAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTGgtaaggatcactgatgctctgccatatgatcgtatctgaaaaagctaagaatgttctggcctgtgggtcaaaagcttttaaactaatgcatatgggataacttctgttttccaagacctatttgttcacttccatttgcctttttttctgttccatactgtgactgtctcttgttgttttctcccttaag
species | Zea mays |
transcript | GRMZM2G154328_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTG GTGGATACTTCATCACTACTGTGCCATGCTGATGTCTCTTGTAAGTCTCACEST: gi|160481308|gb|EY254482.1|EY254482
genomic: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTGgtaaggatca ... ctcccttaagGTGGATACTTCATCACTACTGTGCCATGCTGATGTCTCTTGTAAGTCTCAC
EST: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTG GTGGATACTTCATCACTACTGTGCCATGCTGATGTCTCTTGTAAGEST: gi|60349253|gb|DN216226.1|DN216226
genomic: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTGgtaaggatca ... ctcccttaagGTGGATACTTCATCACTACTGTGCCATGCTGATGTCTCTTGTAAG
EST: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTG GTGGATACTTCATCACTACTGTGCCATGCTGATGTCTCTTGTAAGTCTCAC
genomic: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTGgtaaggatca ... ctcccttaagGTGGATACTTCATCACTACTGTGCCATGCTGATGTCTCTTGTAAGTCTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGGTTATTATTCCTGTATACCAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTGgtaaggatcactgatgctctgccatatgatcgtatctgaaaaagctaagaatgttctggcctgtgggtcaaaagcttttaaactaatgcatatgggataacttctgttttccaagacctatttgttcacttccatttgcctttttttctgttccatactgtgactgtctcttgttgttttctcccttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG