1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcatttttgagctaaaccacgataaataaaaaagaacggagagacgtgtcgtacgtacgtactgtgttatgtttggtcggaccttaacgaaatgtccagTTATTTTTCTTCATCATGCTATTATCCACCGTCTGCACGACCAAGGTGGATGACCCTAGGAATTCATGGCACCGCGGGTGGTGGCCGGTGAAGATTGCCT
species | Zea mays |
transcript | GRMZM2G154293_T01 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGGGCTGTTTAGCGGCTGAGGCCGTGCTGGTCATGAGCCAGACCTTCTGT TTATTTTTCTTCATCATGCTATTATCCACCGTCTGCACGACCAAGGTGGAT
genomic: GGGGCTGTTTAGCGGCTGAGGCCGTGCTGGTCATGAGCCAGACCTTCTGTgtatcctata ... aaatgtccagTTATTTTTCTTCATCATGCTATTATCCACCGTCTGCACGACCAAGGTGGAT
cgtgtcgtacgtacgtactgtgttatgtttggtcggaccttaacgaaatgtccagTTATTTTTCTTCATCATGCTATTATCCACCGTCTGCACGACCAAGGTGGATGACCCTAGGAATTCATGGCACCGCGGGTGGTGGCCGGTGAAGATTGCCT
gaccttaac putative branch site
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttttgagctaaaccacgataaataaaaaagaacggagagacgtgtcgtacgtacgtactgtgttatgtttggtcggaccttaacgaaatgtccagTTATTTTTCTTCATCATGCTATTATCCACCGTCTGCACGACCAAGGTGGATGACCCTAGGAATTCATGGCACCGCGGGTGGTGGCCGGTGAAGATTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ttcattt
- - - - - - - aaaccac
- - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg