1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGAAGGCGATGAGGCTCAAGGAGGAGCTCCTCGACGCCATTGCACCGCTGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacgaagaaactagtagctacgagggacgcaccgtgcatttggtaattggttgatggcagagactcacgtgtatttttttttctttttttgcttcag
species | Zea mays |
transcript | GRMZM2G153444_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|101384159|gb|EB814124.1|EB814124
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|149099024|gb|EE185039.2|EE185039
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|211206430|gb|FL476547.1|FL476547
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|78075732|gb|DV504166.1|DV504166
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|148932405|gb|EC876083.2|EC876083
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|211532260|gb|FL011615.1|FL011615
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|211532259|gb|FL011614.1|FL011614
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|149081773|gb|EE170927.2|EE170927
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|91057036|gb|EB167454.1|EB167454
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCCEST: gi|211532258|gb|FL011613.1|FL011613
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
EST: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAG ATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
genomic: TGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacga ... tttgcttcagATTGTTCAGCAACTGGAGGCGGTGAACCAGGTGAAGGAGCCGCTCAAGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAGGCGATGAGGCTCAAGGAGGAGCTCCTCGACGCCATTGCACCGCTGGACCGTGGCGCCGAGGCCACGCCCGAGGACAAGGAGCGCGTCGAGCAGgtgaggacgaagaaactagtagctacgagggacgcaccgtgcatttggtaattggttgatggcagagactcacgtgtatttttttttctttttttgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG