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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacctgtttttatttaaatattttccatttgatatgtggcctgtcaaatacatgttcattttttcatgcttatctgactttacccttcttttcctggcagATATCAAATGCAGAGTTTACATTTTCACCGTGGACACCTTTTCCTACCAAGAG

Basic information

species Zea mays
transcript GRMZM2G153386_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18162823|gb|BM332662.1|BM332662
EST:     CTAATAATATCCAACCATCAATCCAGCAGAATTTAATAGGATATGAGTTG                         ATATCAAATGCAGAGTTTACATTTTCACCGTGGACACCTTTTCCTACCAAG
genomic: CTAATAATATCCAACCATCAATCCAGCAGAATTTAATAGGATATGAGTTGgtaaggaatg ... ttcctggcagATATCAAATGCAGAGTTTACATTTTCACCGTGGACACCTTTTCCTACCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatacatgttcattttttcatgcttatctgactttacccttcttttcctggcagATATCAAATGCAGAGTTTACATTTTCACCGTGGACACCTTTTCCTACCAAGAG
                          atctgac  putative branch site (score: 3)
                       cttatctgactttacc  CT-rich tract
         ttcatttttt  TA-rich tract