Sequence
atgc intronic sequence ATGC exonic sequence...ggatctgcccttgagatctaggaccctttacaccggatatcgcaccgttaccacttaatctcgtatattcacttagtgccgttgtgctgttgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAGTATGTGCCGCCCACCTTTC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76284642|gb|DV024210.1|DV024210EST: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgttaccacttaatctcgtatattcacttagtgccgttgtgctgttgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAGTATGTGCCGCCCACCTTTC
acttaat putative branch site (score: 4)
tatattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggatctgcccttgagatctaggaccctttacaccggatatcgcaccgttaccacttaatctcgtatattcacttagtgccgttgtgctgttgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAGTATGTGCCGCCCACCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG