1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagtttttgtgagctttctaattctaaaaatattgacattattgcttagctggatatgtttggatttcagaaagtttcctttcgaatctttctaatgcagGTGCAACCCACTCTTATTGGCAGGAAGCAAGTTTTGTCAAATAGCGGTATTGCAAGTATCTCGGTTGTGTCGATAGCATTAGTCATCGGAGGGATAGATA
species | Zea mays |
transcript | GRMZM2G150315_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttagctggatatgtttggatttcagaaagtttcctttcgaatctttctaatgcagGTGCAACCCACTCTTATTGGCAGGAAGCAAGTTTTGTCAAATAGCGGTATTGCAAGTATCTCGGTTGTGTCGATAGCATTAGTCATCGGAGGGATAGATA
ttctaat putative branch site (score: 271)
tctttct CT-rich tract
atatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtttttgtgagctttctaattctaaaaatattgacattattgcttagctggatatgtttggatttcagaaagtttcctttcgaatctttctaatgcagGTGCAACCCACTCTTATTGGCAGGAAGCAAGTTTTGTCAAATAGCGGTATTGCAAGTATCTCGGTTGTGTCGATAGCATTAGTCATCGGAGGGATAGATA
- gtttttg
- - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - attgctt
- - - - - - - - - - - - - - - - - - - - - - - -agctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg