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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGCTTTTTCTGAAGCATATTCTCAGGCTTTGCGGGGTAAACCAGCTGTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttgcatgtctcttttatttgtgtgcgtaagttgatcgtgaaatagggaatttacactgtagattacactgtttgcatagtgaagtctgaaata...

Basic information

species Zea mays
transcript GRMZM2G149994_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149994_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 5'ss of exon 4
GTGAAGCTTTTTCTGAAGCATATTCTCAGGCTTTGCGGGGTAAACCAGCTGTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttgcatgtctctttta---tttgtgtgcgtaagttgatcgtgaaatagggaatttacactgtagattacactgtttgcatagtgaagtctgaaata
| || |||||| ||||||||||||| ||||| |  | ||||| |||||| |||||||| ||||| |||||||||| |||||||||||  ||    |||||||||||||   || |  | |  |   ||| | |  |  |     |  | |   | | | ||| ||| |                                   
GAGAGGCTTTTACTGAAGCATATTCCCAGGCATCACAGGGTAGACCAGCCGTGATATTCATTGATGAACTTGATGACATATGTCCACCGCGTGGCAGTAGgcaagtttgttatattacctacaaattttatatttgccaagaagttattattaatgtatttttcacag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211510550|gb|FL129059.1|FL129059
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
EST: gi|211510555|gb|FL129064.1|FL129064
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
EST: gi|211510558|gb|FL129067.1|FL129067
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
EST: gi|211510556|gb|FL129065.1|FL129065
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
EST: gi|211512912|gb|FL129068.1|FL129068
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
EST: gi|71445517|gb|DR826567.1|DR826567
EST:     GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAA                         GAGAGAGAATG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATG
EST: gi|211512914|gb|FL129070.1|FL129070
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
EST: gi|211510557|gb|FL129066.1|FL129066
EST:     GTGATATTCATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAG                         GAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG
genomic: GTGATATTTATTGACGAACTTGATGCCATATGTCCACGCCGCAATAGTAGgcaagttttg ... tctttcacagGAGAGAGAATGAGTCCCGCATTGTTGGCCAACTTCTTACTCTCATGGATGG