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gtccttcagtgcttctgttaatgacacatggacatatagacactggccataatttcccattgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCATCCATACACGGAAAATGAAGTTGGGAGAGGATGTAGATCTTTGGAAGG
species | Zea mays |
transcript | GRMZM2G149994_T04 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCCCCAGATGTGGAAGGCCGACCCGAGATACTACGCEST: gi|76015203|gb|DT942373.1|DT942373
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|211031499|gb|FL245298.1|FL245298
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|24773622|gb|CA408876.1|CA408876
genomic: GTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCCCCAGATGTGGAAGGCCGACCCGAGATTCTACGCEST: gi|37391984|gb|CF633237.1|CF633237
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|211033356|gb|FL442938.1|FL442938
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAAAGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|67026000|gb|CO454749.1|CO454749
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|211031500|gb|FL245299.1|FL245299
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|24934696|gb|CA452914.1|CA452914
genomic: GCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGCCGACACGAGATACTACGCEST: gi|67018676|gb|CO447425.1|CO447425
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|24961608|gb|CA483609.1|CA483609
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGCCGACACGAGATACTACGCEST: gi|5296146|gb|AI783021.1|AI783021
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCEST: gi|33092600|gb|CF052594.1|CF052594
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAAATGTGGAAGGGCGACACGAGATACTACGCEST: gi|24773369|gb|CA408623.1|CA408623
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGCCGACACGAGATACTACGCEST: gi|24773164|gb|CA408418.1|CA408418
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGCCGACACGAGATACTACGCEST: gi|4609489|gb|AI600328.1|AI600328
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
EST: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAG GTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
genomic: GCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGgtccttcagt ... tgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGC
tgttaatgacacatggacatatagacactggccataatttcccattgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCATCCATACACGGAAAATGAAGTTGGGAGAGGATGTAGATCTTTGGAAGG
tttcccatt CT-rich tract
ataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttcagtgcttctgttaatgacacatggacatatagacactggccataatttcccattgatctgcagGTGCTGTATGTCCCGCCACCAGATGTGGAAGGGCGACACGAGATACTACGCATCCATACACGGAAAATGAAGTTGGGAGAGGATGTAGATCTTTGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG