Sequence
atgc intronic sequence ATGC exonic sequencegttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149994_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 3'ss of exon 3
gttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
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gtaaaatatgcctcattttaggatttctttaatcaaa--cctcctttaatggttattgttgctatgcttcagAAAAAACTTCAGCAAGCTGTTGAATGGCCCATCAAGCATGCTGCTTCATTTGATAGACTTGGAATATCACCTATCCGTGGGGTGCTATTGCATGGTCCAC
upper sequence: GRMZM2G149994_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 8
gttaggcatttcttgt-tttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
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gtttgttaaattttgcatttgatttgattctga-gaatcttcagtgatacctgtgcttgtccttgaa---cagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
ttttgat putative branch site (score: 4)
aaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT