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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCACTTGTGATGGAAGAGCTGAAGGCATTTTTTCGGCCTGAATTGCTCAATAGATTGGATGAAGTGGTTGTATTCCACCCTCTTGAAAAGACCCAGgtctgtggttacttttactgttctgttctgtcgttattatgtggttttgaatatcgtatcactcattcatgaaagataggagcaaaaaatgttagcttgatacaatccacttgcacctagaataaatgtgcagttgtgcactatttttttccatatgtagttcaaacgagacatttgtactcccgacattttgcag

Basic information

species Zea mays
transcript GRMZM2G149567_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149567_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os04g33210.1 (Oryza sativa), 5'ss of exon 10
GAAATCACTTGTGATGGAAGAGCTGAAGGCATTTTTTCGGCCTGAATTGCTCAATAGATTGGATGAAGTGGTTGTATTCCACCCTCTTGAAAAGACCCAGgtctgtggttacttttactgttctgttctgtcgttattatgtggttttgaatatcgtatcactcattcatgaaagataggagca-aaaaatgttagcttgatacaatccacttgcacctagaataaatgtgcagttgtgcactatttttttccatatgtagttcaaacgagacatttgtactcccgacattttgcag
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---------------------------------------------------------AATTGATGAAGTGGTTGTGTTCCACCCTCTTGAGAAAACTCAGGCATGT---TGCTTTTA-------------TAGATACTGCAC----TTGCATATTGCCTTGTACTTTTGTTAATACTgtgagtttagaaatgctaccactccataacgaaaacaaac--aaaatattcatcttgttgcg-ataccttttgctcacatagagtagaatcg---cccttatatcc--------------