Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtatttatacctttaggccttgtttgggtattctagtattcaccccaatccacatgtattgaggtggattggggtgtaaattaatttacaccccaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 6
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtatttatacctttaggccttgtttgggtattctagtattcaccccaatccacatgtattgaggtgga-ttggggtgtaaattaatttacaccccaa
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CAAGTACGTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGgtata-attgttgtctttacaaatctacgtggtgattaaatacgagtt---attttcatagattgaccttcagctcttttgcag-----------------
upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 7
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatg-tatttatacctttaggccttgtttgggtattctagtattcaccccaatccacatgtattgaggtg----gattggggtgtaaattaatttacaccccaa--------------------------------------------
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CAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAGGAATACATAAAGTTGCAGgtgtgacatctttgattttttatttttttt----attctgatgagaaccatatttggtgattagtgctcttacatgataggaacttacacaagtccacctattattagatttggaaatgaataagggctggtattttttgtatttgcag
upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 7
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatg-tatttatacctttaggccttgtttgggtattctagtattcacc--ccaatccacatgtattgaggtggattg---gggtgtaaattaatttacaccccaa--------------------------------
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CAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatctttgattttgtttttattctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggtccacatattattagatttggaaatgatgaagggctggtattttgtatttgcag
upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 7
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatg--------tatttatacctttagg------ccttgtttgggtattctagtattcaccccaatccacatgtattgaggtggattg-gggtgtaaattaatttacaccccaa-------------------------------------------------
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CAAGTGAGGACTCAACAAATTCATGAGATGAAGAAAAAAGAGAAGGAATACATAAAATTGCAGgtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaaggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcag
upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
lower sequence: PP1S47_178V6.1 (Physcomitrella patens), 5'ss of exon 7
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatg-----tatttatacctttaggccttgttt----gggtattct---agtattcaccccaatccacatg-tattgaggtgg-attggggtgtaaattaatttacaccccaa-------
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CAAGTGAAGACTCAGCAGATGCACGAGTTAAAGAAGAAAGAGAAGGAATACATCAAGTTGCAGgtataaggaattttcttgtcttaataatttcttttacagcgtattcctagacgactggttctcttttgcataatgtttctatcatatttgaattgaggtgaatgtatatcgtctggtacag
upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
lower sequence: PP1S91_39V6.1 (Physcomitrella patens), 5'ss of exon 9
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtatttatacctttag------gccttgtttgggtattctagtat-tcaccccaatccacatgtattgaggtggattggggtgtaaattaatttacaccccaa------------------
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CAAGTTAAAGCTCAGCAGATGCATGAACTGAAGAAGAAAGAGAAAGAGTATATCAAGTTGCAGgtatatgaagactctatttgccaacaacgatgctactacaggtcactatgtgattatgagtccttcgcatagcgcttttttttctttttttctgatgaactgtgttggtttgttggctggtccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148964224|gb|EE015404.2|EE015404EST: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAG GAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
genomic: AGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtattt ... taatttgcagGAAAAGCTAAATCAGGTATTGATGGAGAAGAAAAAGGAATCATCCCGTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatgtatttatacctttaggccttgtttgggtattctagtattcaccccaatccacatgtattgaggtggattggggtgtaaattaatttacaccccaa
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - AAAGAA