1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggaaaacaaacactgctcgtttcatggtatttctagaaaagaaaccagatccttgttagactgaattcctgaacccgtaactatgtttttttttcctcagAGGGCCTGAAGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATG
species | Zea mays |
transcript | GRMZM2G147268_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
cagatccttgttagactgaattcctgaacccgtaactatgtttttttttcctcagAGGGCCTGAAGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATG
ccgtaac putative branch site (score: 25)
ctatgtttttttttcc CT-rich tract
taactatgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaaacaaacactgctcgtttcatggtatttctagaaaagaaaccagatccttgttagactgaattcctgaacccgtaactatgtttttttttcctcagAGGGCCTGAAGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- -aaacaaa
- - - - - - ctgctcg
- - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttt