1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttcataaaattgcttggcacagtttgttcacttctatatttcaccatgctgtattccgaatggttacatgttcctaagtatgttatattcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACGAGAATCGGAAAAGGGAATTGGCAGCTGCCCTTCATGCTCAGTTCAAGG
species | Zea mays |
transcript | GRMZM2G145376_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|30307115|gb|CD001788.1|CD001788
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|32788326|gb|CD940562.1|CD940562
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|7136119|gb|AW498434.1|AW498434
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|110538420|gb|EE042403.1|EE042403
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|4776299|gb|AI665302.1|AI665302
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: GCAATCCTTTCCCNCTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|211453058|gb|FL439877.1|FL439877
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: TGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTYTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACEST: gi|78079826|gb|DV508238.1|DV508238
genomic: TGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
EST: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAG CGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
genomic: GCAATCCTTTCCCACTGCCTGAAATTTATGAGGCATTCCAAAGCAAAAAGgtaaggtcaa ... tcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGAC
ccatgctgtattccgaatggttacatgttcctaagtatgttatattcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACGAGAATCGGAAAAGGGAATTGGCAGCTGCCCTTCATGCTCAGTTCAAGG
taagtatgttatattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcataaaattgcttggcacagtttgttcacttctatatttcaccatgctgtattccgaatggttacatgttcctaagtatgttatattcattatcagCGTTCTGCTCTGGAAGATATCCAAAAGATGATTCGGGAGCTACAGCTTGACGAGAATCGGAAAAGGGAATTGGCAGCTGCCCTTCATGCTCAGTTCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc