Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTGTGAGCGTTAGCTCTTATGATCCAACTTGGCAAGGAAGGTTGCTGGAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaatcctcccatcgtctttatttgcatgtttcaaactctttgtgcttaacatccacgtttctgaactctgagctactgtttcagtagttattt...

Basic information

species Zea mays
transcript GRMZM2G144362_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144362_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g41390.2 (Oryza sativa), 5'ss of exon 7
TTCGTGTGAGCGTTAGCTCTTATGATCCAACTTGGCAAGGAAGGTTGCTGGAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtat-----ctaaaatcctcccatcgtctttatttgcatgtttcaaactctttgtgcttaacatccacgtttctgaactctgagctactgtttcagtagttattt
||||||||||||||   ||||||||||||| ||||||||||||| | || |||||||| ||||||||    |||| |||  ||||||||||||||||||||| |      |||||   | |||||      |||| |       | | | | | | |  ||| || |   |||||||     ||  |     ||  |     | |
TTCGTGTGAGCGTTTCTTCTTATGATCCAAATTGGCAAGGAAGGCTACTAGAGACTTATGATACTCACAGTGATGCTTTTGAAATTGCACCTGCCTGCTGgtgtgtatcttaaaacatttccatc----caatttacgaaggaaagagtttat-tccacaacctcaattcttctgaaagtctagaaatcaactccctcaaattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014215|gb|EE043769.2|EE043769
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|148933495|gb|EC877204.2|EC877204
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|13237097|gb|BG355111.1|BG355111
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|211211873|gb|FL151948.1|FL151948
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|78123130|gb|DV541514.1|DV541514
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|78079634|gb|DV508046.1|DV508046
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|76291843|gb|DV031411.1|DV031411
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|71430540|gb|DR811590.1|DR811590
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|78088518|gb|DV516911.1|DV516911
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|211356743|gb|FL440510.1|FL440510
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|93281087|gb|EB673351.1|EB673351
EST:     AAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: AAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|93282997|gb|EB675261.1|EB675261
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
EST: gi|86468332|gb|DY234702.1|DY234702
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTCCCTGCTG                         GATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tgatacatagGATGCCAGATTGGGCCGATATAGCGTCCTCACTCAACCAGCTCTCGGACTC