1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgaaaaagaagtgagcatttatctgatcctgtaaggcttcagtttcttgttaactttataactcttgtattttctgaatgaactgagattaaggacttatgacaatgcttgtgatcttccattgcttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAGCAGATGTTAGAATTACTTG
species | Zea mays |
transcript | GRMZM2G144362_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|94479450|gb|EB708408.1|EB708408
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACCAGACTGGAAT GACCCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCA
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACC-TCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCA
gaactgagattaaggacttatgacaatgcttgtgatcttccattgcttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAGCAGATGTTAGAATTACTTG
tgcttac putative branch site (score: 45)
cttactcc CT-rich tract
agattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaaaaagaagtgagcatttatctgatcctgtaaggcttcagtttcttgttaactttataactcttgtattttctgaatgaactgagattaaggacttatgacaatgcttgtgatcttccattgcttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAGCAGATGTTAGAATTACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG