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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGCCGACGCCGACGCCGGCCGCGGCGACCCGCCCGGCGGCAAGGACCTCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcgagaacccaacccacacgaattgcttcgtggatccccccccccccccccccgccgtgtgttttggtgaaaaaaaaaatcaaaacggaaacc...

Basic information

species Zea mays
transcript GRMZM2G143883_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143883_T06 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g33550.1 (Oryza sativa), 5'ss of exon 1
GCCCGCCGACGCCGACGCCGGCCGCGGCG---ACCCGCCCGGCGGCAAGGACCTCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgag-cagcgag--aacccaacccacacgaattgcttcgtggatccccccccccccccccccgccgtgtgttttggtgaaaaaaaaaatcaaaacggaaacc---------
   ||  ||||| |||| ||||  |||||    ||  ||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||  | | |   |   | |   |  ||||    |||  || |  | |   |           | |    | |   || |         | |    ||               
---CGTGGACGCGGACGGCGGCGACGGCGGGCGCCGCCCCGGCGACAAGGACCTCGAGCGGTTCTACCTCGCCTCCGCCGCCGACTCCTCCATCCCCGACGAGgtcggtcggtcggtcgatcggtcgaacaccccatgcg-cgcgagttctttcttgtttataatctcta-atctggcggcggccgcggcgaccgcggcgtggcgtggcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148948203|gb|EC893719.2|EC893719
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|148973859|gb|EE025001.2|EE025001
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|93283239|gb|EB675503.1|EB675503
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211316715|gb|FL359694.1|FL359694
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGGCG-TGGCGCTGGC
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGG-CGGTGGCGCTGGC
EST: gi|71328928|gb|DR801150.1|DR801150
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|148951656|gb|EC897401.2|EC897401
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149069600|gb|EE157980.2|EE157980
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211047107|gb|FL348892.1|FL348892
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTTGGC
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCT-GGC
EST: gi|211278199|gb|FL349954.1|FL349954
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211040402|gb|FL319771.1|FL319771
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAAGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|76281721|gb|DV021289.1|DV021289
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149109316|gb|EE190135.2|EE190135
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211086223|gb|FL328937.1|FL328937
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGGTGGCGCTGGC
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGG-TGGCGCTGGC
EST: gi|211208169|gb|FL329118.1|FL329118
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149069635|gb|EE158020.2|EE158020
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211049235|gb|FL320171.1|FL320171
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211537824|gb|FL337840.1|FL337840
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211312214|gb|FL336744.1|FL336744
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211137928|gb|FL319378.1|FL319378
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|93014896|gb|EB640416.1|EB640416
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211382845|gb|FL310396.1|FL310396
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGGGACGCGGTGCATCCGCGAGGCGGTGGCCCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149020921|gb|EE045762.2|EE045762
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149085834|gb|EE175357.2|EE175357
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|211341854|gb|FL306858.1|FL306858
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCA
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCA
EST: gi|148938919|gb|EC883278.2|EC883278
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|78075545|gb|DV503979.1|DV503979
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149084377|gb|EE173826.2|EE173826
EST:     CTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: CTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|89249377|gb|DY621163.1|DY621163
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|78087753|gb|DV516146.1|DV516146
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|149086895|gb|EE176439.2|EE176439
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|148931643|gb|EC874791.2|EC874791
EST:     TCGAGCGCTTCTACCTCGCCTCCGCAGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
EST: gi|71769980|gb|DR967917.1|DR967917
EST:     TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAG                         GTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG
genomic: TCGAGCGCTTCTACCTCGCCTCCGCGGCCGACTCCACCATCCCCGACGAGgtgagcagcg ... cgaccaaaagGTCGCGGAGCTGATGGTGACGCGGTGCATCCGCGAGGCGGTGGCGCTGGCG