1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagttttctattatttttgttagatatacttcccgtgatcatcattttgcttacccaaaagcattactttgactatgacatgaaaactccggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAGTGCAGCTAGAAATGAGCAAACTCCTTATATGCCAGAAATTCCGGATATA
species | Zea mays |
transcript | GRMZM2G139837_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAG GTGGGAATCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAGEST: gi|14548463|gb|BI096807.1|BI096807
genomic: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAGgtattctttg ... cggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAG
EST: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAG GTGGGAAGCTAACCAAATTCCTAGAGTCAEST: gi|60395009|gb|DN227878.1|DN227878
genomic: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAGgtattctttg ... cggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCA
EST: CCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAG GTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAGEST: gi|71448040|gb|DR829090.1|DR829090
genomic: CCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAGgtattctttg ... cggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAG
EST: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAG GTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAGEST: gi|76293831|gb|DV033399.1|DV033399
genomic: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAGgtattctttg ... cggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAG
EST: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAG GTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAG
genomic: TTTGAGTCTGGTGAGCCACTTGATGGCTTTGAGTACCTTCGGCGTGTCAGgtattctttg ... cggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAG
ttttgcttacccaaaagcattactttgactatgacatgaaaactccggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAGTGCAGCTAGAAATGAGCAAACTCCTTATATGCCAGAAATTCCGGATATA
attacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagttttctattatttttgttagatatacttcccgtgatcatcattttgcttacccaaaagcattactttgactatgacatgaaaactccggtttgcagGTGGGAAGCTAACCAAATTCCTAGAGTCAAGGTGGCCAAGATATATTCAAGTGCAGCTAGAAATGAGCAAACTCCTTATATGCCAGAAATTCCGGATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa