1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagcatggaccgtacaaattgttctgatctgaaacaacatgttttaatattttttctggtcatttttccag
species | Zea mays |
transcript | GRMZM2G138886_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGEST: gi|84908772|gb|DW404650.1|DW404650
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGG
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAACEST: gi|76283026|gb|DV022594.1|DV022594
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAACEST: gi|211247237|gb|FL156677.1|FL156677
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
EST: CATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAACEST: gi|50324450|gb|CO519576.1|CO519576
genomic: CATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAACEST: gi|76294034|gb|DV033602.1|DV033602
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGGAAAAEST: gi|71439376|gb|DR820426.1|DR820426
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAA-
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGAATGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTEST: gi|211247239|gb|FL156679.1|FL156679
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTT
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAACEST: gi|61118386|gb|DN559347.1|DN559347
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
EST: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
genomic: AAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagc ... atttttccagGTTCACTACAAGTTTGAACTGATGGATGAGACGCTCTTTCTTATGGTAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacaaaagcatggaccgtacaaattgttctgatctgaaacaacatgttttaatattttttctggtcatttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT