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gtaatttgtactttggcaacaaaaaatgattgaattatgtcgttgcttggatagaaactaccagctttcataaatagtcttgatgaaccccattgagcactgagaatttacattctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCATGTTCGACAACTTGGTGACTGGACACGAGAGCTCAAGAGGGTTTTTGCA
species | Zea mays |
transcript | GRMZM2G138152_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCAEST: gi|32929468|gb|CF034280.1|CF034280
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCAEST: gi|32928792|gb|CF033604.1|CF033604
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: GTGTCACCCTTTGAATG GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCAEST: gi|32929691|gb|CF034503.1|CF034503
genomic: GTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: AGTGGGCAATATATGTTTGTTCAATGCCCAGCACTGTCACCCTTTGAATG GCACCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCAEST: gi|5566901|gb|AI881812.1|AI881812
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCAEST: gi|32929564|gb|CF034376.1|CF034376
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
ataaatagtcttgatgaaccccattgagcactgagaatttacattctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCATGTTCGACAACTTGGTGACTGGACACGAGAGCTCAAGAGGGTTTTTGCA
tcttgat putative branch site (score: 243)
cattctctt putative PPT
aatttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtactttggcaacaaaaaatgattgaattatgtcgttgcttggatagaaactaccagctttcataaatagtcttgatgaaccccattgagcactgagaatttacattctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCATGTTCGACAACTTGGTGACTGGACACGAGAGCTCAAGAGGGTTTTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG