Sequence
atgc intronic sequence ATGC exonic sequence...gaatgttttctgctagaaccatgaaacaattattgatgtctgcgtctatgttctgttaagtgatatgtctatcctttttcattggtgtttcttgatgcagGGGACAAAGGCTGAAGGTGACAAATTCTGGAAAGCATATAGATTACAGCAAGAAGGAACAAAATGGATCTAAAAAGTTGAAGCTGTCAGTTATTGATATT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211026210|gb|FL452154.1|FL452154EST: TTGAAGAGGAAGCGGAATGATGGGGTTGCAGATATACCTGAGAGCTCAAA GGGACAAAGGCTGAAGGTGACAAATTCTGGAAAGCATATAGATTACAGCAA
genomic: TTGAAGAGGAAGCGGAATGATGGGGTTGCAGATATACCTGAGAGCTCAAAgtatgcttct ... cttgatgcagGGGACAAAGGCTGAAGGTGACAAATTCTGGAAAGCATATAGATTACAGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgttctgttaagtgatatgtctatcctttttcattggtgtttcttgatgcagGGGACAAAGGCTGAAGGTGACAAATTCTGGAAAGCATATAGATTACAGCAAGAAGGAACAAAATGGATCTAAAAAGTTGAAGCTGTCAGTTATTGATATT
tcttgat putative branch site (score: 4)
tgtttctt CT-rich tract
tttttcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatgttttctgctagaaccatgaaacaattattgatgtctgcgtctatgttctgttaagtgatatgtctatcctttttcattggtgtttcttgatgcagGGGACAAAGGCTGAAGGTGACAAATTCTGGAAAGCATATAGATTACAGCAAGAAGGAACAAAATGGATCTAAAAAGTTGAAGCTGTCAGTTATTGATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG