1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttaaaatgctaccatccatacctgtcctcgtccattcaatttagttgtcttctatacatttaacgtataagtttattttttcttgtatatatctgcacagGCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACATGGTGATGCATCACTTGCTGTTGATGACTTTTTGGCACGGACTGACGGGC
species | Zea mays |
transcript | GRMZM2G134753_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAATGCGAAAAATGGTTGAAAGCGCATGGGATAGTTCTTTCAGAAG GCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACACEST: gi|32824635|gb|CD964357.1|CD964357
genomic: AGAAGAATGCGAAAAATGGTTGAAAGCGCATGGGATAGTTCTTTCAGAAGgtaacagtgg ... atctgcacagGCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACAT
EST: AGAAGAATGCGAAAAATGGTTGAAAGCGCATGGGATAGTTCTTTCAGAAG GCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACAT
genomic: AGAAGAATGCGAAAAATGGTTGAAAGCGCATGGGATAGTTCTTTCAGAAGgtaacagtgg ... atctgcacagGCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACAT
tgtcttctatacatttaacgtataagtttattttttcttgtatatatctgcacagGCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACATGGTGATGCATCACTTGCTGTTGATGACTTTTTGGCACGGACTGACGGGC
atttaac putative branch site (score: 112)
atttaacgtataagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaatgctaccatccatacctgtcctcgtccattcaatttagttgtcttctatacatttaacgtataagtttattttttcttgtatatatctgcacagGCTTCGTCTTCTACACTTTACATGCCAGAGCCAGAGAATGCGGTTGCACATGGTGATGCATCACTTGCTGTTGATGACTTTTTGGCACGGACTGACGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT